function analyzeCodebase(repository) {
  const metrics = { 
    complexity: 0, 
    coverage: 0, 
    security: [], 
    dependencies: new Map(), 
    qualityScore: 0 
  };
  
  // Analyze repository structure and content
  for (const file of repository.getFiles()) {
    const fileMetrics = calculateFileMetrics(file, { includeComplexity: true, testCoverage: true });
    metrics.complexity += fileMetrics.complexity;
    metrics.coverage += fileMetrics.coverage;
    
    const securityIssues = scanSecurityVulnerabilities(file, { includeCWE: true, checkOWASP: true });
    metrics.security.push(...securityIssues.map(issue => 
    ({ ...issue, severity: calculateSeverity(issue) })));
  }
  
  return generateDetailedReport(metrics, { includeRecommendations: true, format: 'detailed' });
}

class CodeAnalyzer {
  constructor(repository) {
    this.repo = repository;
    this.results = new Map();
    this.metrics = new MetricsCollector({ includeQuality: true, trackDependencies: true });
    this.securityScanner = new SecurityScanner({ scanSecrets: true, checkVulnerabilities: true });
  }

  async analyze() {
    const files = await this.repo.getFiles({ excludePatterns: ['node_modules/**', 'dist/**'] });
    
    for (const file of files) {
      const [analysis, security] = await Promise.all([
        this.processFile(file, { includeMetrics: true, analyzeComplexity: true }),
        this.securityScanner.scan(file, { includeCWE: true, checkOWASP: true })
      ]);
      
      this.results.set(file.path, { analysis, security, timestamp: new Date() });
      this.metrics.collect({ file, analysis, security });
    }
    
    return this.generateReport({ includeVisualizations: true, recommendations: true });
  }
}

// Security and Dependency Analysis
const analyzeDependencies = async (codebase) => {
  const results = { vulnerabilities: [], dependencies: new Map(), securityScore: 0 };
  const dependencies = await getDependencyList(codebase, { includeTransitive: true });
  
  // Analyze dependencies for security issues and license compliance
  for (const dep of dependencies) {
    const [vulnerabilities, licenseInfo] = await Promise.all([
      checkVulnerabilities(dep, { includeCVE: true, checkOWASP: true }),
      analyzeLicenseCompliance(dep, { validateUsage: true })
    ]);
    
    if (vulnerabilities.length > 0 || licenseInfo.hasIssues) {
      results.vulnerabilities.push({
        dependency: dep.name,
        issues: vulnerabilities,
        license: licenseInfo,
        priority: calculatePriority(vulnerabilities)
      });
    }
  }
  
  return { ...results, remediationPlan: generateRemediationPlan(results) };
}function analyzeCodebase(repository) {
  const metrics = { 
    complexity: 0, 
    coverage: 0, 
    security: [], 
    dependencies: new Map(), 
    qualityScore: 0 
  };
  
  // Analyze repository structure and content
  for (const file of repository.getFiles()) {
    const fileMetrics = calculateFileMetrics(file, { includeComplexity: true, testCoverage: true });
    metrics.complexity += fileMetrics.complexity;
    metrics.coverage += fileMetrics.coverage;
    
    const securityIssues = scanSecurityVulnerabilities(file, { includeCWE: true, checkOWASP: true });
    metrics.security.push(...securityIssues.map(issue => 
    ({ ...issue, severity: calculateSeverity(issue) })));
  }
  
  return generateDetailedReport(metrics, { includeRecommendations: true, format: 'detailed' });
}

class CodeAnalyzer {
  constructor(repository) {
    this.repo = repository;
    this.results = new Map();
    this.metrics = new MetricsCollector({ includeQuality: true, trackDependencies: true });
    this.securityScanner = new SecurityScanner({ scanSecrets: true, checkVulnerabilities: true });
  }

  async analyze() {
    const files = await this.repo.getFiles({ excludePatterns: ['node_modules/**', 'dist/**'] });
    
    for (const file of files) {
      const [analysis, security] = await Promise.all([
        this.processFile(file, { includeMetrics: true, analyzeComplexity: true }),
        this.securityScanner.scan(file, { includeCWE: true, checkOWASP: true })
      ]);
      
      this.results.set(file.path, { analysis, security, timestamp: new Date() });
      this.metrics.collect({ file, analysis, security });
    }
    
    return this.generateReport({ includeVisualizations: true, recommendations: true });
  }
}

// Security and Dependency Analysis
const analyzeDependencies = async (codebase) => {
  const results = { vulnerabilities: [], dependencies: new Map(), securityScore: 0 };
  const dependencies = await getDependencyList(codebase, { includeTransitive: true });
  
  // Analyze dependencies for security issues and license compliance
  for (const dep of dependencies) {
    const [vulnerabilities, licenseInfo] = await Promise.all([
      checkVulnerabilities(dep, { includeCVE: true, checkOWASP: true }),
      analyzeLicenseCompliance(dep, { validateUsage: true })
    ]);
    
    if (vulnerabilities.length > 0 || licenseInfo.hasIssues) {
      results.vulnerabilities.push({
        dependency: dep.name,
        issues: vulnerabilities,
        license: licenseInfo,
        priority: calculatePriority(vulnerabilities)
      });
    }
  }
  
  return { ...results, remediationPlan: generateRemediationPlan(results) };
}